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What Is a Merkle Tree in Blockchain?

Imagine verifying an entire library of books by checking just a single page. That’s the idea behind Merkle Trees in blockchain.

A Merkle Tree is a data set up that allows users to confirm a large trunk of information in a fast and secure manner. By segmenting this data into bits and connecting them with cryptographic hashes, blockchains can verify transactions without having to scan every detail. 

This structure is important because it keeps blockchain networks efficient, trustworthy and tamper-proof even as they grow to manage multiple transactions.

Understanding the Basics of a Merkle Tree

Think of a Merkle Tree like a family tree, but instead of names, it holds transaction data. At the bottom are the “leaves,” which represent individual transactions. Each transaction is turned into a short digital code called a hash.

These hashes are linked together to create new hashes at the next stage. This process continues until only one hash is left at the top known as the Merkle Root, which acts like a digital fingerprint for all transactions in the block.

As a result of this setup, users can verify the possibility of a single transaction is valid without a need to examine the block. This makes Merkle Trees a simple but effective way to keep blockchains like Bitcoin fast, secure, and reliable.

Why Are Merkle Trees Important in Blockchain?

Merkle trees play a fundamental role in the efficiency and security of the blockchain system. They safeguard the block’s information against unwanted modifications. When a transaction is altered, the Merkle tree becomes unusable, and the system will notify the user of the alteration.  

Merkle trees also allow rapid and effective transaction validation. A node does not need to review the entire block; instead, they can verify the transaction by checking a few hashes. This represents a substantial reduction in time and processing power needed.  

Merkle trees also enable lightweight clients, specifically Simplified Payment Verification (SPV) nodes in Bitcoin. They are able to verify transactions in a safe manner and only require a small portion of the blockchain, supporting fast and accessible networks.

How Merkle Trees Work in Practice

Think of a Merkle Tree as a tidy, cryptographic filing system that lets you prove a single item belongs to a huge pile without opening every file. In blockchains like Bitcoin, Merkle Trees turn a long list of transactions into a single short fingerprint called the Merkle root, which is then locked into the block header.

Step 1 — Hash the transactions (the leaves)

Every transaction in a block is first hashed to produce a transaction ID. In Bitcoin that ID is the result of a secure hash function applied to the transaction data. Those hashes become the leaves of the Merkle Tree.

  • Example: T1, T2, T3, T4 → H1 = hash(T1), H2 = hash(T2), H3 = hash(T3), H4 = hash(T4).

Step 2 —Pair up hashes and hash the pairs

Take the leaf hashes two at a time, combine them, and hash the result to make the next level up. Repeat this pairing and hashing until one hash remains. That final hash is the Merkle root.

  • Example with four transactions:
    • H12 = hash(H1 + H2)
    • H34 = hash(H3 + H4)
    • Merkle root = hash(H12 + H34)
      This builds a small tree from many leaves into a single top node.

Handling an Odd Number of Transactions

If there is an odd number of leaves, the last hash is duplicated before hashing it with a partner. So with five leaves you might do H5 + H5 to form the paired hash at the next level. This keeps the tree balanced and predictable.

Where the Merkle Root Goes and Why it Matters

The Merkle root is placed inside the block header along with the previous block hash, timestamp, and nonce. Miners use the block header to compute the block’s overall hash. Because the Merkle root depends on every transaction, the block header is effectively tied to the exact set of transactions in the block. Change any single transaction and the root changes, and the block hash no longer matches.

Proving a Single Transaction is Included (Merkle proof / SPV)

This is where Merkle Trees shine for lightweight clients. To prove that T3 is in a block, you do not need the whole block. You need only a short list of sibling hashes along the path from T3 up to the root. This list is the Merkle proof.

  • Example Merkle proof for T3: provide H4 and H12. The verifier computes hash(H3 + H4) to get H34, then hash(H12 + H34) to get the Merkle root. If that root matches the block header, T3 is confirmed as included.
    This proof size grows with the logarithm of the number of transactions, not linearly, so it stays tiny even for large blocks.

How Merkle Trees Detect Tampering and Save Resources

If someone alters a transaction, its leaf hash changes, which cascades upward and changes the Merkle root. That mismatch is instantly detectable because the root no longer matches the one in the advertised block header. 

On top of that, Merkle Trees let lightweight wallets (SPV nodes) verify inclusion without downloading entire blocks. They only need block headers and small Merkle proofs, saving bandwidth and storage while keeping basic security.

In Summary 

Merkle Trees package many transactions into a single cryptographic fingerprint, enable quick proofs of inclusion, and let light clients verify data efficiently. That combination of integrity, speed, and compact proofs is why Merkle Trees are a core building block for Bitcoin and many other blockchains.

Advantages of Merkle Trees in Blockchain

Merkle Trees bring several practical advantages to blockchain systems, making them both efficient and secure.

Efficiency: They make it possible to manage and verify huge amounts of transaction data without using too many resources. Instead of checking every single transaction, only a few hashes are needed to confirm accuracy, which saves both time and storage space.

Security: Even the smallest change in any transaction will alter its hash, which then affects every level of the Merkle Tree up to the root. This means tampering or data corruption is immediately noticeable, helping blockchains maintain their integrity.

Scalability: Merkle Trees also make blockchain networks more scalable. They allow lightweight verification, meaning millions of users can safely confirm transactions without downloading the entire blockchain. This is how Bitcoin’s SPV wallets operate, fast, secure, and efficient for everyday use.

The Future of Merkle Trees in Web3

Merkle Trees remain fundamentally impactful in the growth of blockchains and the systems associated with Web3. Even as networks pursue faster and more scalable solutions, the structure of these trees holds the same relevance, particularly within Layer 2 technologies and zero-knowledge proofs (zk-proofs).  

Within Layer 2 scaling solutions, Merkle Trees enable the grouping of thousands of transactions, which leads to the faster verification of compact proofs on the primary blockchain. This capability minimizes congestion and associated costs, preserving trust at the same level.  

Merkle Trees also serve as the pivotal structure within zk-proofs, which enable users to validate information while keeping the data concealed. They allow for the affirmation of a statement’s veracity while obscuring critical information.  

No matter the advances in technology, the principles of Merkle Trees—secure data linking, verification, and transparency—will always lie at the core of developing blockchain. To sum up, these trees remain in the background but they are the drivers of the new generation of Web3 technology.

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Chiliz white papers

On October 10th, 2025, The Chiliz Group Limited notified a revised version of the CHZ whitepaper to the Malta Financial Services Authority (MFSA). This revised version follows the approval of the Pepper8 governance proposal, which amended the inflation schedule applicable to the CHZ Token via a hard fork. For more information on this governance proposal, please visit https://docs.chiliz.com/chiliz-chain-changelog/governance-proposals-and-decisions/august-2025-pepper8-proposal

In addition, this revised version also reflects the change of name of HX Entertainment Limited, which became The Chiliz Group Limited, applicable as of October 7th, 2025.

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